PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G19020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 304aa    MW: 33165.8 Da    PI: 5.1894
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G19020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.11.9e-121055246
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgkl 46
                      i+++ +r++tf +R++g+ KK +   +LCd++v +i ++   g++
  LPERR08G19020.1 10 LIDDEKKRKTTFKNRLKGLVKKVKQFETLCDVDVFLICIAgAGGEV 55
                     699********************************99765044554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-8161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.914152IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-16179IPR002100Transcription factor, MADS-box
CDDcd002662.01E-15380No hitNo description
PRINTSPR004044.7E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-131155IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MPRTKLVLKL IDDEKKRKTT FKNRLKGLVK KVKQFETLCD VDVFLICIAG AGGEVVTTWP  60
ADRAAVERLI DRLRATPPAK IREVHTTETF LQDDLGKQRR NLIKARAAGE LPSWDSSLDK  120
LDADGLSNLY DALSEKLERA HRRIAALGGG GGVALPEIGF EFPFAGFASS SSNTGLTQFY  180
YPLHDVTLPV THMPPPLCLT YDQMPPPPAI AAAPFEFMNG NAYATNYIEH GGEATTTAGF  240
LDDHCQGFVA GEGYNGDVLG HGFAVAGAGY DLDLECCMMN SDVWPMMNTI ENPMCSNFQG  300
GFQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XAE20.0A0A0D9XAE2_9ORYZ; Uncharacterized protein
STRINGORGLA01G0349700.12e-87(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-16M-type_MADS family protein